Introducing some plant epiphytic yeasts from Iran

Document Type : Research Paper

Author

Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization (AREEO), Tehran, Iran

Abstract

Yeasts are single–celled microorganisms classified as members of the fungi kingdom. This group are very important in biological control, so that several species have been produced and supplied as biocontrol products at the commercial level. In Iran, several types of yeast have been isolated and introduced as biocontrol agent. Therefore, the purpose of this study is to know the yeast biodiversity from agricultural microflora. For this reason, epiphytic yeasts on crop plants and fruit trees were collected from the Northern provinces and some other parts of Iran during 2015–2016. The yeast isolates were recovered on malt agar (MA) medium. All yeast isolates were basically grouped according to the morphological characteristics of colonies. Based on morphological charecterestics such as color and colony form, 24 isolates were selected as reperesentatives for identification. The results of biochemical tests using Simple Matching Coefficient in 87% showed that all isolates are grouped into 14 separate clusters. Twenty–four isolates representatives of 14 groups were selected and analyzed by partial sequencing of ITS1–5.8S–ITS2 region with ITS1 and ITS4 primers. All isolates were identified as Aureobasidium pullulans, Candida membranifaciens, Cystobasidium minutum, Debaryomyces hansenii, Filobasidium magnum, Metschnikowia koreensi, Naganishia albida, Ogataea zsoltii, Papiliotrema flavescens, Rhodotorula glutinis, R. mucilaginosa and Sporobolomyces ruberrimus. Among them, four species i.e. O. zsoltii, M. koreensi, P. flavescens, C. minutum are new records to the Iranian mycoflora. All yeasts were described by macroscopic and microscopic morphological characters including colony color and shape; cell size and shape; and by location of isolation.

Keywords


Aghaei Gharehbolagh, S., Nasimi, M., Afshari, A., Ghasemi, Z. & Rezaie, S. 2017. First case of superficial infection due to Naganishia albida (formerly Cryptococcus albidus) in Iran: A review of the literature. Current Medical Mycology, 3: 33–37.
Alavi Fard, F., Etebarian, H. & Sahebani, N. 2012. Biological control of gray mold of apple by Candida membranifaciens, Rhodotorula mucilaginosa and Pichia guilliermondii. Iranian Journal of Plant Protection Science, 48: 17–26.
Beiki, F., Mohamadi Gholtapeh, E., Rahimian, H., Shamsbakhsh, M., Barzegar, A., Busquets Bisbal, A. & Lalucat, J. 2013. Biological control of citrus blast disease using some yeast strains isolated from citrus orchards in the northern provinces of Iran. Biocontrol in Plant Protection, 1: 53–65.
Benbow, J.M. & Sugar, D. 1999. Fruit surface colonization and biological control of postharvest diseases of pear by preharvest yeast applications. Plant Disease, 83: 839–844.
Borhani, B, Rahimian, H, Babaeizad, V. & Zohour, E. 2013. Cryptococcus adeliensis a yeast species inciting stem canker on stone fruit trees. Journal of Plant Pathology, 95: 21137–21143.
Borhani, B. & Rahimian, H. 2013. Yeast species as the causal agents or associated with stem canker of stone fruit trees. Iranian Journal of Plant Pathology, 49: 461–462.
Buzzini, P., Lachance, M. & Yurkov, A.M. 2017. Yeasts in Natural Ecosystems: Diversity. Springer, 499 pp, Switzerland.
Chalutz, E., Ben–Arie, R., Droby, S., Cohen, L., Weiss, B. & Wilson, C.L. 1988. Yeasts as biocontrol agents of postharvest diseases of fruit. Phytoparasitica, 16: 69–75.
Chalutz, E. & Wilson, C. 1990. Postharvest biocontrol of green and blue mold and sour rot of citrus fruit by Debaryomyces hansenii. Plant Disease, 74: 134–137.
Dehghan–Niri, M., Rahimian, H. & Babaeizad, V. 2015. Cryptococcus uzbekistanensis causing canker on stone fruit trees. New Disease Reports, 31: 13.
Deshpande, M.S., Rale, V.B. & Lynch, J.M. 1992. Aureobasidium pullulans in applied microbiology: A status report. Enzyme and Microbial Technology, 14: 514–527.
Droby, S., Chalutz, E., Wilson, C. L & Wisniewski, M. 1989. Characterization of the biocontrol activity of Debaryomyces hansenii in the control of Penicillium digitatum on grapefruit. Canadian Journal Of Microbiology, 35: 794–800.
Droby, S., Lischinski, S., Cohen, L., Weiss, B., Daus, A., Chand–Goyal, T., Eckert, J.W. & Manulis, S. 1999. Characterization of an epiphytic yeast population of grapefruit capable of suppression of green mold decay caused by Penicillium digitatum. Biological Control, 16: 27–34.
Droby, S., Hofstein, R., Wilson, C.L., Wisniewski, M., Fridlender, B., Cohen, L., Weiss, B., Daus, A., Timar, D. & Chalutz, E. 1993. Pilot testing of Pichia guilliermondii, a biocontrol agent of postharvest diseases of citrus fruit. Biological Control, 3: 47–52.
El–Ghaouth, A., Wilson, C.L. & Wisniewski, M. 1998. Ultrastructural and cytochemical aspects of the biological control of Botrytis cinerea by Candida saitoana in apple fruit. Phytopathology, 88: 282–91.
Esteve–Zarzoso, B., Belloch, C., Uruburu, F. & Querol, A. 1999. Identification of yeasts by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. International Journal of Systematic Bacteriology, 49: 329–337.
Farahani, L., Etebarian, H.R., Sahebani, N. & Aminian, H. 2011. Biocontrol of blue mold of apple by Candida membranifaciens in combination with silicon. Archives of Phytopathology and Plant Protection, 45: 310–317.
Fell, J.W., Scorzetti, G., Statzell–Tallman, A., Pinel, N. & Yarrow, D. 2002. Recognition of the basidiomycetous yeast Sporobolomyces ruberrimus sp. nov. as a distinct species based on molecular and morphological analyses. FEMS Yeast Research, 1: 265–70.
Gadanho, M. & Sampaio, J.P. 2002. Polyphasic taxonomy of the basidiomycetous yeast genus Rhodotorula: Rh. glutinis sensu stricto and Rh. dairenensis comb. nov. FEMS Yeast Research, 2: 47–58.
Gholamnejad, J., Etebarian, H. & Sahebani, N. 2010. Biological control of apple blue mold with Candida membranifaciens and Rhodotorula mucilaginosa. African Journal of Food Science, 4: 1–7.
Hamidi, M., Kennedy, J.F., Khodaiyan, F., Mousavi, Z. & Hosseini, S. 2019. Production optimization, characterization and gene expression of pullulan from a new strain of Aureobasidium pullulans. International Journal of Biological Macromolecules, 138: 725–735.
Hashem, M., Alamri, Saad A., Hesham, A., Al–Qahtani, F. & Kilany, M. 2014. Biocontrol of apple blue mould by new yeast strains: Cryptococcus albidus KKUY0017 and Wickerhamomyces anomalus KKUY0051 and their mode of action. Biocontrol Science and Technology, 24: 1137–1152.
Helbig, J. 2002. Ability of the antagonistic yeast Cryptococcus albidus to control Botrytis cinerea in strawberry. Biocontrol, 47: 85–99.
Hong, S.G., Chun, J., Oh, H.W. & Bae, K.S. 2001. Metschnikowia koreensis sp. nov., a novel yeast species isolated from flowers in Korea. International journal of systematic and evolutionary microbiology, 51: 1927–1931.
Janisiewicz, W. J. 1987. Postharvest biological control of blue mold on apple Phytopathology. 77: 481–485.
Kachalkin, A.V., Abdullabekova, D.A., Magomedova, E.S., Magomedov, G.G. & Chernov, I.Y.u. 2015. Yeasts of the vineyards in dagestan and other regions. Microbiology, 84: 425–432.
Kalogiannis, S., Tjamos, S.E., Stergiou, A., Antoniou, P.P., Ziogas, B.N. & Tjamos, E.C. 2006. Selection and evaluation of phyllosphere yeasts as biocontrol agents against grey mould of tomato. European Journal of Plant Pathology, 116: 69–76.
Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. 2018. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular biology and evolution, 35: 1547–1549.
Kurtzman, C., Fell, J.W. & Boekhout, T. 2011. The Yeasts: a Taxonomic Study. Elsevier, 178 pp, America.
Lachance, M., Starmer, W.T., Rosa, C.A., Bowles, J.M., Barker, J.S. & Janzen, D.H. 2001. Biogeography of the yeasts of ephemeral flowers and their insects. FEMS Yeast Research, 1: 1–8.
Liu, J., Sui, Y., Wisniewski, M., Droby, S. & Liu, Y. 2013. Review: utilization of antagonistic yeasts to manage postharvest fungal diseases of fruit. International Journal of Food Microbiology, 167: 153–160.
Liu, X.Z., Wang, Q.M., Göker, M., Groenewald, M., Kachalkin, A.V., Lumbsch, H.T., Millanes, A.M., Wedin, M., Yurkov, A.M., Boekhout, T. & Bai, F.Y. 2015. Towards an integrated phylogenetic classification of the Tremellomycetes. Studies in Mycology, 81: 85–147.
Long, C., Deng, B. & Deng, X. 2007. Commercial testing of Kloeckera apiculata, isolate 34–9, for biological control of postharvest diseases of citrus fruit. Annals of Microbiology, 57: 203–207.
Mehrotra, N., Sharma, N., Nigam, M. & Ghosh, R. 1998. Biological control of sour–rot of citrus fruits by yeast. Proceedings of the National Academy of Sciences, India Section B (Biological Sciences), 68:133–139.
Mehrotra, N.K., Neeta, S., Ratna, G. & Madhulika, N. 1996. Biological control of green and blue mould disease of citrus fruit by yeast. Indian Phytopathology, 49: 350–354.
Mehrotra, RS. 2009. Principles of microbiology. Tata McGraw–Hill Education. New dehlim India.
Mokhtari, M., Etebarian, H.R., Mirhendi, S.H. & Razavi, M. 2011. Identification and phylogeny of some species of the genera Sporidiobolus and Rhodotorula using analysis of the 5.8 s rDNA gene and two ribosomal internal transcribed spacers. Archives of Biological Sciences, 63: 79–88.
Mokhtarnejad, L., Arzanlou, M. & Babai–Ahari, A. 2016. Molecular and phenotypic characterization of ascomycetous yeasts in hypersaline soils of Urmia Lake basin (NW Iran). Rostaniha. 16: 174–185.
Mokhtarnejad, L., Arzanlou, M., Babai–Ahari, A. & Turchetti, B. 2015. Molecular identification of basidiomycetous yeasts from soils in Iran. Rostaniha, 16: 61–80.
Obanor, F., Walter, M., Waipara, N. & Cernusko, R 2002. Rapid method for the detection and quantification of Botrytis cinerea in plant tissues. New Zealand Plant Protection, 55: 150–153.
Péter, G., Tornai–Lehoczki, J., Fülöp, L. & Dlauchy, D. 2003. Six new methanol assimilating yeast species from wood material. Antonie van Leeuwenhoek, 84: 147–159.
Razani, S.H., Mousavi, S.M., Yeganeh, H.M. & Marc, I. 2007. Fatty acid and carotenoid production by Sporobolomyces ruberrimus when using technical glycerol and ammonium sulfate. Journal of Microbiology and Biotechnology, 17: 1591–1597.
Razavi, S. & Marc, I. 2006. Effect of temperature and pH on the growth kinetics and carotenoid production by Sporobolomyces ruberrimus H110 using technical glycerol as carbon source. Iranian Journal of Chemistry and Chemical Engineering, 25: 59–64.
Sampaio, J.P. & Fonseca, A. 1995. Physiological aspects in the systematics of heterobasidiomycetous yeasts. Studies in Mycology, 38: 29–46.
Sarvtin, M.T., Hedayati, M.T.i, Abastabar, M. & Shokohi, T. 2014. Debaryomyces hansenii colonization and its protein profile in psoriasis. Iranian Journal of Dermatology, 17: 134–137.
Schaad, N.W., Jones, J.B. & Chun, W. 2001. Laboratory Guide for Identification of Plant Pathogenic Bacteria. APS Press, 373 pp, Minnesota.
Sharma, R.R., Dinesh, S. & Rajbir, S. 2009. Biological control of postharvest diseases of fruits and vegetables by microbial antagonists: a review. Biological Control, 50: 205–221.
Vero, S., Garmendia, G., Garat, M.F., de Aurrecoechea, I. & Wisniewski, M. 2011. Cystofilobasidium infirmominiatum as a biocontrol agent of postharvest diseases on apples and citrus. Acta Horticulturae, 905: 169–180.
Wang, Q.M., Groenewald, M., Takashima, M., Theelen, B., Han, P.J., Liu, X.Z., Boekhout, T. & Bai, F.Y. 2015. Phylogeny of yeasts and related filamentous fungi within Pucciniomycotina determined from multigene sequence analyses. Studies in Mycology, 81: 27–53.
White, T.J., Bruns, T., Lee, S. & Taylor, J. 1990. Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics. Pp. 315–322, In:PCR Protocols a Guide to Methods and Applications.(Innis, M. A., Gelfand, D. H., Sninsky, J. J.& White, T. J. eds.), Academic Press, San Diego.
Wilson, C.L., Wisniewski, M.E., Droby, S. & Chalutz, E. 1993. A selection strategy for microbial antagonists to control postharvest diseases of fruits and vegetables. Scientia Horticulturae, 53: 183–189.
Yamada, Y., Maeda, K. & Mikata, K. 1994. The phylogenetic relationships of the hat–shaped ascospore–forming, nitrate–assimilating Pichia species, formerly classified in the genus Hansenula Sydow et Sydow, based on the partial sequences of 18S and 26S ribosomal RNAs (Saccharomycetaceae): the proposals of three new genera, Ogataea, Kuraishia, and Nakazawaea. Bioscience, Biotechnology and Biochemistry, 58: 1245–1257.
Zhao, L., Zhang, H., Li, J., Cui, J.J., Zhang, X. & Ren, X. 2012. Enhancement of biocontrol efficacy of Pichia carribbica to postharvest diseases of strawberries by addition of trehalose to the growth medium. InIrnational Journal of Molecular Sciences, 13: 3916–3932.